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無性系種子園最小近交配置研究
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國家重點研發(fā)計劃項目(2017YFD0600500)


Minimum-inbreeding Configuration for Clonal Seed Orchard
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    摘要:

    為避免無性系之間自交和近交繁殖,使種子園內無性系盡可能保持花期一致性,促進親本有效授粉,提高種子產量和質量,以內蒙古紅花爾基樟子松(Pinus sylvestris var. mongolica Litv.)國家良種基地中的樟子松為無性系材料,隨機選取13株無性系樟子松,采用SSR(Simple sequence repeats)分子標記法,利用Gene Marker V22軟件得到樟子松親本間的遺傳距離,設定花期和花粉傳播范圍作為實驗數(shù)據,進行種子園無性系設計。提出雙種群改進型自適應步長的果蠅優(yōu)化算法(Twopopulation improved adaptive steplength fruit fly optimization algorithm, TIASFOA),并與改進果蠅優(yōu)化算法(Improved fruit fly optimization algorithm,IFOA)、粒子群算法(Particle swarm optimization,PSO)、遺傳算法(Genetic algorithm,GA)進行對比實驗,從適應度、收斂性和1~3m授粉范圍內花期相鄰或相同的無性系數(shù)量3方面進行對比分析。在遺傳距離、花期和花粉量已知的條件下,在種群規(guī)模為20~60的范圍內分別執(zhí)行200次迭代實驗,對適應度進行分析,結果顯示,TIASFOA算法的平均值、最大值、最小值和方差比IFOA、PSO、GA算法都?。划敺N群規(guī)模為20時,TIASFOA算法相同或相鄰花期的無性系數(shù)量之和的平均值分別為125和204,大于其他3種算法,TIASFOA算法可以得到較優(yōu)適應度為133.016,與種群規(guī)模為50時的最小值132.733相差0.283;TIASFOA算法可以獲得較優(yōu)的適應度,并使無性系之間盡量保持花期一致。以遺傳距離、花期和花粉量作為種子園設計的約束條件,更貼近生產環(huán)境,為無性系種子園優(yōu)化設計提供了參考。

    Abstract:

    The optimal design of clonal seed orchard was carried out to determine a more reasonable ratio of clones, so as to avoid self-crossing and inbreeding between clones, and ensure the consistency of florescence of clones in seed orchard as far as possible, in order to promote effective parental pollination, improve seed yield and quality, and provide reference for the design of highgeneration seed orchard. The genetic distance between the parents of Pinus sylvestris var. mongolica Litv. in the National Production Base of Improved Seeds in Honghua’erji of Inner Mongolia Autonomous Region was determined by using SSR markers and Gene Marker V2.2 software. Florescence and pollen range were set, and 13 clones were randomly selected as experimental data. The twopopulation improved adaptive step-length fruit fly optimization algorithm (TIASFOA) was designed, and improved fruit fly optimization algorithm (IFOA), particle swarm optimization (PSO) and genetic algorithm (GA) were compared and analyzed in three aspects: fitness value, convergence and the number of clones with adjacent or identical flowering period in pollination range. Under genetic distance, flowering and pollen counts were known, the population size of 20~60 was carried out 200 times respectively, the average, maximum, minimum and variance fitness values of TIASFOA were smaller than those of IFOA, PSO and GA. When the population size was 20, the mean value of the sum of number of clones in the same or adjacent florescence of TIASFOA was 125 and 204, respectively, which was larger than that of the other three algorithms. In this population size, TIASFOA can obtain the optimal fitness value of 133.016, which was 0.283 different from the minimum value of 132.733 when the population size was 50. Genetic distance, flowering period and pollen quantity were taken as constraints for optimal calculation, which were closer to the production environment and provided references for the optimal design of clonal seed orchard. In practical application, population scale of 20 can be used to obtain better seed orchard schemes in a short time and maintain the high genetic diversity of seed orchard. 

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齊建東,買晶晶,劉春霞,李偉.無性系種子園最小近交配置研究[J].農業(yè)機械學報,2020,51(3):241-248. QI Jiandong, MAI Jingjing, LIU Chunxia, LI Wei. Minimum-inbreeding Configuration for Clonal Seed Orchard[J]. Transactions of the Chinese Society for Agricultural Machinery,2020,51(3):241-248.

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  • 收稿日期:2019-07-13
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  • 在線發(fā)布日期: 2020-03-10
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