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基于KEGG的碳固定和氮代謝通路土壤微生物組篩選
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Soil Microbiome Screening for Carbon Fixation and Nitrogen Metabolism Pathways Based on KEGG Database
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    摘要:

    利用宏基因組測(cè)序技術(shù),以KEGG數(shù)據(jù)庫(kù)的碳固定、氮代謝途徑為工具,以陜西渭北旱塬小麥連作糧田長(zhǎng)期定位3種施肥方式的土壤為研究對(duì)象,對(duì)影響該地區(qū)農(nóng)田生態(tài)系統(tǒng)中碳固定和氮代謝通路的主要微生物物種及功能基因進(jìn)行分析。結(jié)果表明:3個(gè)施肥水平下土壤微生物在KEGG數(shù)據(jù)庫(kù)代謝通路的基因PcoA分析顯示,常規(guī)施肥土壤功能基因豐度與平衡施肥處理的關(guān)系密切,而與低量施肥處理關(guān)系較遠(yuǎn)。施肥明顯改變了碳固定、氮代謝的功能基因豐度,常規(guī)施肥和平衡施肥的主要功能基因相對(duì)豐度均大于低量施肥;在碳固定途徑中常規(guī)施肥主要功能基因相對(duì)豐度大于平衡施肥,在氮代謝途徑中平衡施肥主要功能基因相對(duì)豐度大于常規(guī)施肥。Sorangium、Spiribacter、 Lentzea、 Rhodovibrio、 Pseudomonas、 Flavihumibacter、 Streptomyces、 Nitrososphaera、Rubrobacter、Dyadobacter、Novosphingobium、Pedosphaera、Thermogemmatispora為該地區(qū)小麥連作土壤碳固定途徑標(biāo)記性微生物種群;E4212A.fumA.fumB、E2319.atoB、mdh、ACSS.acs、korB.oorB.oforB、pps.ppsA、ppdK、sdhA.frdA、K18594、K18604、E4212B.fumC、folD、ppc、accA為施肥水平產(chǎn)生明顯響應(yīng)的碳固定功能基因。Sphingopyxis、Alcanivorax、Nitrosospira、Aeromicrobium、Roseiflexus、Devosia、Altererythrobacter為該地區(qū)小麥連作土壤氮代謝的主要物種;nirB、nasA、nasB、nrt.nak.nrtP.nasA、GDH2為施肥水平產(chǎn)生明顯響應(yīng)的氮代謝主要功能基因。平衡施肥更有益于節(jié)肥減排和土壤的可持續(xù)利用,是適合該地區(qū)小麥連作糧田的施肥方式。

    Abstract:

    Using metagenome sequencing technology and fixed carbon and nitrogen metabolism in KEGG database as a research tool, taking wheat continuous cropping grain longterm positioning of three methods for fertilizing soil in Shaanxi Weihe Hanyuan as the research object, the influence of microbes in the farmland ecosystem in the region of fixed carbon and nitrogen metabolism pathway of main microbial species and functional genes were analyzed, and the results were as follows: PcoA analysis of metabolic pathways of soil microorganisms at KEGG database Level 3 at three fertilization levels showed that the abundance of functional genes in soil under conventional fertilization was closely related to the balanced fertilization treatment, but it was far from that under low fertilization. Fertilization significantly changed the functional gene abundance of carbon fixation and nitrogen metabolism, and the main functional genes of conventional fertilization and balanced fertilization were larger than that of lowdose fertilization. In the carbon fixation pathway, the abundance of main functional genes in the conventional fertilization was greater than that in the balanced fertilization, and in the nitrogen metabolism pathway, the abundance of the main functional genes in the balanced fertilization was greater than that in the conventional fertilization. Sorangium, Spiribacter, Lentzea, Rhodovibrio, Pseudomonas, Flavihumibacter, Streptomyces, Nitrososphaera, Rubrobacter, Dyadobacter, Novosphingobium, Pedosphaera, Thermogemmatispora were population of soil carbon fixation pathway marker microorganisms in this region. E4212A.fumA.fumB, E2319.atoB, mdh, ACSS.acs, korB.oorB.oforB, pps.ppsA, ppdK, sdhA.frdA, K18594, K18604, E4212 B.fumC, folD, ppc and accA produced significant responses to carbon fixation function genes for fertilization level. Sphingopyxis, Alcanivorax, Nitrosospira, Aeromicrobium, Roseiflexus, Devosia, Altererythrobacter were major species of nitrogen metabolism. nirB, nasA, nasB, nrt.nak.nrtP.nasA and GDH2 were the main functional genes of nitrogen metabolism in this region. Balanced fertilization was more beneficial to fertilizer saving and emission reduction and sustainable use of soil, which was the fertilization level suitable for continuous wheat field in this region.

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王小利,王淑蘭.基于KEGG的碳固定和氮代謝通路土壤微生物組篩選[J].農(nóng)業(yè)機(jī)械學(xué)報(bào),2020,51(8):303-310. WANG Xiaoli, WANG Shulan. Soil Microbiome Screening for Carbon Fixation and Nitrogen Metabolism Pathways Based on KEGG Database[J]. Transactions of the Chinese Society for Agricultural Machinery,2020,51(8):303-310.

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  • 收稿日期:2020-05-30
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  • 在線發(fā)布日期: 2020-08-10
  • 出版日期: 2020-08-10